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Product Overview

RNAscope™ HiPlex Pro was developed by ACD and Lunaphore to detect up to 12 RNA targets in a method that is optimized for RNA and protein co-detection based on seqIF™ (sequential immunofluorescence) on Lunaphore's hyperplex platform, COMET™. Combining both assays RNAscope HiPlex Pro with seqIF on COMET provides provides end-users with a fully-automated, same-section assay integrating multiplex RNA and multiplex protein data without compromising panel flexibility or sensitivity. The combined workflow allows users to select any 12 RNAscope targets and up to 24 protein targets using off-the-shelf, non-conjugated primary antibodies. The assay is designed to be compatible with current procedures on COMET using a unique protease-free pretreatment to promote streamlined, spatial multiomic data acquisition with subcellular resolution.

RNAscope Hiplex on comet image

Product Features

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Same-Section Multiomics

  • Single workflow for co-detection of RNA and protein targets on the same tissue section

  • Generate spatially resolved multiomic data at subcellular resolution

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Fully-Automated Workflow

  • Automated from target probe hybridization and protein detection to imaging
  • Stain up to 4 slides in every run
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Flexible Assay Design

  • Use our extensive RNAscope probe catalog or design custom probes for RNAs
  • Design custom panels

Technology Overview

Multiomics Workflow COMET RNAscope Banner

Fully-Automated, Protease-Free Workflow:  Automated probe hybridization, signal amplification, labeling, imaging and cleaving follow the multiomic-optimized deparaffinization and antigen retrieval steps. Each round allows the detection of 4 RNA targets for up to 3 rounds which can be followed by seqIF protocols.

Featured Applications

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Immunology

  • Assess cytokine profiles in inflamed tissues and identify the cellular source of inflammatory molecules
  • Visualize gene signatures with cell-specific markers to assess activation states of immune cells
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Immuno-oncology

  • Evaluate the tumor immune context for a better therapeutic outcome
  • Study tumor heterogeneity by visualizing unique morphology and expression profiles
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Immunity and Infectious Disease

  • Localization—visualizing infected cell types and tissues enables elucidation of viral transmission, pathogen-host interactions, and localization of hidden reservoirs
  • Differential detection—targeting the sense or anti-sense strand enables detection and differentiation of virus during latent or active stages
  • Coinfection detection—detect multiple viruses or co-infection

Cytokine Detection with Multiomics on COMET

Sample Type: FFPE human breast cancer​

RNA: IL6 (green)​

Protein: CD3 (yellow), Vimentin (orange), aSMA (blue)

Multiomics on COMET​: FFPE human breast cancer​ RNA: IL6 (green)​ Protein: CD3 (yellow), Vimentin (orange), aSMA (blue)
RNAscope Probes

Find RNAscope Probes

Find probes below or request a custom design if you don’t see your target.

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Search Antibodies

Work with off-the-shelf, non-conjugated primary antibodies or quickly start using SPYRE Antibody Panels and detection reagents from Lunaphore.​

Resources

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Automated Multiomics on COMET

COMET streamlines hyperplex immunofluorescence at single-cell resolution Tech Note

COMET streamlines hyperplex immunofluorescence at single-cell resolution

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SITC 2023 Poster

Integration of RNA in situ hybridization and sequential immunofluorescence for same-slide fully automated multiomics analysis of the tumor microenvironment.

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AGBT Poster
Unveiling the spatial dynamics of the tumor microenvironment: integrated RNA and protein profiling on the same slide through automated spatial multiomics analysis.

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AACR Poster

Uncovering the spatial dynamics of the tumor microenvironment: integrated RNA and protein profiling on the same section through automated spatial multiomics analysis.

Watch our webinar on profiling the tumor microenvironment through same-section fully automated spatial multiomics.

 

Ordering Information

 

TypeComponentCatalog #
Reagent KitsRNAscope HiPlex Pro for COMET 4-plex, 20-slide Reagent Kit322085
RNAscope HiPlex Pro for COMET 12-plex, 20-slide Reagent Kit322075
Negative Control ProbeRNAscope HiPlex12 CS Negative Control Probe324347
Positive Control ProbesRNAscope HiPlex12 CS Positive Control Probe-Hs324317
RNAscope HiPlex12 CS Positive Control Probe-Mm324437
RNAscope HiPlex12 CS Positive Control Probe-Rn324337

View product page for complete PDF ordering checklist for all required materials.